OmicsFormer Analysis Report

Model Information

Model Type: EnhancedMultiOmicsTransformer

Device: cpu

Analysis Summary

Attention Patterns Extracted: ['main']

Embeddings Extracted: ['pooled']

Feature Importance Analysis: ['genomics', 'transcriptomics', 'proteomics', 'metabolomics', 'attention_main']

Analysis Visualizations

Omicsformer_Attention_Heatmap

Omicsformer_Attention_Heatmap

Omicsformer_Embeddings_Pca

Omicsformer_Embeddings_Pca

Omicsformer_Embeddings_Tsne

Omicsformer_Embeddings_Tsne

Omicsformer_Embeddings_Umap

Omicsformer_Embeddings_Umap

Omicsformer_Correlations

Omicsformer_Correlations

Omicsformer_Feature_Importance_Genomics

Omicsformer_Feature_Importance_Genomics

Omicsformer_Feature_Importance_Transcriptomics

Omicsformer_Feature_Importance_Transcriptomics

Omicsformer_Feature_Importance_Proteomics

Omicsformer_Feature_Importance_Proteomics

Omicsformer_Feature_Importance_Metabolomics

Omicsformer_Feature_Importance_Metabolomics

Omicsformer_Pathways_Genomics

Omicsformer_Pathways_Genomics

Omicsformer_Pathways_Transcriptomics

Omicsformer_Pathways_Transcriptomics

Omicsformer_Distributions

Omicsformer_Distributions

Recommendations

Use attention visualizations to understand cross-modal interactions
Analyze feature importance to identify key biomarkers
Use embedding visualizations for sample clustering analysis
Consider correlation analysis for modality relationship insights